External Guides¶
The World Wide Web has been of incalculable benefit to humanity. We owe Sir Tim Berners-Lee an enormous debt of gratitude.
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If you have suggestions for this page, please send the link(s) and your reasons for nominating it/them to bitsupport.
CAVEAT EMPTOR¶
You need to consider whether what you're reading on an external web site applies to JHPCE. Policies and practices differ between clusters, as does available software and their versions. Don't copy-and-paste blindly. Nonetheless, there is a wealth of information out there that you can apply to your work.
SLURM Web Sites of Note¶
We are accumulating this information on this page.
We also have a document with links to not only the vendor's documentation for each common command, but also pages we've written with advice and examples for some important commands.
User tutorials¶
- R/Bioconductor-powered Team Data Science - this site has a wealth of information for improving your data science and teamwork skills. A real gem for people new to the field!
- Lieber Institute RStats club
- Leo Collado Torres YouTube Channel including JHPCE playlist - note that the JHPCE playlist starts off with videos featuring the Sung Grid Engine job scheduler, which has been replaced by SLURM in 2023. The data science contents of the SGE-containing videos may still be of interest.
- Lieber Institute module config and Lieber Institute module source code - Lieber has generously built and maintains many software modules for JHPCE users
- Youtube videos from Lieber RSTATS club on laptop setup:
- macOS: https://youtu.be/8tuI-ZAlZ1Y
- winOS: https://youtu.be/qtn3eTwFlZI
- Another Lieber video about JHPCE https://twitter.com/lcolladotor/status/1779209787340681678
JHPCE Tutorials¶
- JHPCE 3.0 Orientation Slides -- SLURM scheduler & Rocky 9
- C-SUB JHPCE Orientation Slides 2023